Local Install Guide

Quick Local Install

Running these simple command will launch the DEBrowser within your local machine.

Before you start; First, you will have to install R and/or RStudio. (On Fedora/Red Hat/CentOS, these packages have to be installed; openssl-devel, libxml2-devel, libcurl-devel, libpng-devel)

You can download the source code or the tar file for DEBrowser `here.<https://github.com/UMMS-Biocore/debrowser/releases>`_

Installation instructions from source:

  1. Install the required dependencies by running the following commands in R or RStudio.

    source(“http://www.bioconductor.org/biocLite.R”)

    biocLite(“debrowser”)

  2. Start R and load the library

    library(debrowser)

  3. Start DE browser

    startDEBrowser()

Once you run ‘startDEBrowser()’ shiny will launch a web browser with your local version of DEBrowser running and ready to use!

For more information about DEBrowser, please visit our Quick-start Guide or our DESeq/DEBrowser section within readthedocs.